Addressing the shutter speed issue. I assume 1/1000 was as quick as you could go given the conditions on the day, limiting yourself to ISO 800 and, the big restrictor, f3.5 - f6.3.
For this sort of thing an f2.8 lens will allow you to get 1/4000 of a second without too much problem due to the relationship between shutter speed and aperture.
The shallow depth of field at f2.8 shouldn't be a problem as you are looking at a relatively thin object.
Of course with an f2.8 lens you an get the shutter speed but the challenge remains to get the AF working quickly enough. Having said that, if your on a tripod, have a play with Manual focus and continuous drive.
Using MF will allow the camera to shoot quicker making your chances of getting that perfect shot that much greater.
Hth
J
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