I recently had EXACTLY the same symptoms with mine.
Turned out to be air leaking past the injector seals. Replaced them and a faulty upstream O2 sensor, and back to normal. Mine has just ticked over 200k's
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Whats the word with enabling the 4.6 tune. Is it in the ecu as previously thought or does it need a new flash by the factory?
ALERT: Massive thread mine
After selling my mint but seriously gutless D2a HSE, I've bought another D2 V8 but with a manual and vapour injected LPG. Only cost me $4650!
I've got a new heart for it in my shed. A Ford 5.0L out of an AU Fairlane.
I've started stripping the Ford loom and ripped apart the motor to get it machined.
I'll be creating a thread in the projects section for more progress.
Discovery 2 (Ford)5L V8 with 5 speed and LPG. Watch this space!
Subsequent research shows the Motronic ECU is basically nonprogrammable with the exception on one person in the world. And it probably wouldn't run something else.