Having charged the batteries overnight I checked the voltage at the starter battery at 6.40am this morning. With charger on it was 14.0V and when I turned the charger off it was at 13.11V. I checked at 6.55am and voltage was 12.92V.
I took the old alternator to an auto electrician and they had hoped to have a look at it today but didn't call me so obviously they didn't get to it.
I came home and checked the battery voltage and it was 12.43V. I plugged in the Nanocom and with the ignition on II the live data showed a voltage of 12.0V. I started the vehicle and the battery light remained illuminated. The live reading slowly went up through 13 to 14 and then 15 before peaking at 15.9 when the 'bings' commenced, the dash warning lights came on and the message centre displaye 'communication with transmission lost not all gears available' of some such, then 'park brake fault' etc.
Turned engine off and read the fault codes:
U0010 Medium Speed CAN Communication bus (pending): ECU Instrument Pack
U0132 Lost communication with ride level ctrl module / Lost communication with suspension module A: ECU Instrument Pack
P0626 Generator field terminal - circuit high (intermittent): ECU Engine Management
P1934 Vehicle speed signal (intermittent): ECU - Engine Management
P0563 System Voltage high (pending): ECU - Transfer Case
P0563 System Voltage high (pending): ECU - Auto gearbox
P0500 Vehicle Speed sensor A (intermittent): ECU - Auto gearbox
C1A00 Control Module (intermittent): ECU - Parking Brake
C1A00 Control Module (intermittent): ECU - ABS System
U0402 Invalid data received from transmission control module (pending): ECU - All Terrain Control
U0416 Invalid data received from vehicle dynamics control module (pending): ECU - All Terrain Control
U0403 Invalid data received from transfer control module (pending): ECU - All Terrain Control
U0155 Lost communication with instrument cluster control module (intermittent): ECU Body Control
U0300 Internal control module software incompatibility (intermittent): ECU - Body Control
U0010 Medium speed CAN communication bus (intermittent): ECU Audio Front Control
U2003 Fibre optic communication bus (intermittent): ECU Audio Front Control
So I will now wait until I either have my old alternator returned to me in certified working order or purchase a new one. I will put whichever of those it is in the vehicle. While doing that I will be able to check the wiring of the plug for the alternator which may well be part of the issue.
I will also procure a new starter battery to be used at the same time - to eliminate the current one as a possible cause/problem/influence. Current start battery is a Century DIN85LMF of 780CCA. It was put into the vehicle the day before I purchased in on 1 Sept 2015.

