Have you tried disconnecting the aftermarket cruise, or at least rended it disabled by disconnecting the power from it. I have had a few probs years ago with after market cruise systems on other makes of vehicles with drive by wire systems. (rodeo's and jackaroo's) They were sending irregular signals to the ECU and making the vehicles go into limp home mode.
This of course depends on the type of cruise fitted. Some aftermarket ones have a chain thing that mechanically controls the pedal/potentiometer. Some types splice into the wiring of the pedal/potentiomter and send send signals to represent the pedal position. Hope this makes some sense. Good luck with it.


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