Most tuning efforts to get more power out of an engine are limited by how much air you can get into the pots. With fuel injection getting extra fuel is not that much of an issue. In a turbo diesel getting more air into the pots usually involves more boost from the turbo, this results in more heat in the air which is usually overcome by a bigger/better charge cooler either bigger air to air or a change to water cooled system.
Exhaust issues result from the extra heat produced by burning more fuel with possible distortion of the exhaust manifold and possible broken exhaust studs. It is not uncommon to have people replace the studs for a bigger size and also alter the exhaust manifold by cutting into the webbing between the exhaust ports to reduce the distortion from the extra heat.
A bigger exhaust pipe will also reduce the back pressure and allow the turbo to spool up quicker.
I'd say you will get some improvement from reflashing the ecu however it is likely to be at the expense of having an engine that can harm itself. You need to get an egt monitor to ensure you are aware of what all that extra fuel is doing to the exhaust temperature. Too high and exhaust temp for too long and you could damage the engine and turbo. You would also help the exhaust temps by forcing more cool air through the engine which will require an improved charge cooler. Yes some improvement but more improvement with a greater safety margin would be obtained by improving the charge cooler as well.
Someone that really knows what they are talking about will come along soon and give you the drum.


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