Of course, when they OVERHEATt. But the whole point of the exercise is to fix it so it doesn't overheat, had my head machined when i did the head gasket along with new viscous clutch and rodded radiator and it ran very cool even in slow off-road conditions.
Anyway lots of TDI owners the skim the head, its common practice - that's why you get it hardness tested first.

