I seem to remember something about 4 into 1 manifolds (many derivitives including stock) give better low rpm torque. 4 into 2 into 1 make for better breathing at higher rpms, hence more power.
Smaller dia primary pipes will help with mid-range, and larger diameter (41-44mm) with longer runs will help with high rpm power, particularly if the all primaries are of the same length.

