With my disco, I put the Codan autotune on the bottom bar (after the welded aluminium bracket on the top bar broke).
The reason for having the upper section of the Codan autotune above the bonnet is because a good bit of the signal is radiated from there (unlike Barret autotunes that only radiate from the whip). If the upper section was below the top of the bonnet a lot of signal toward the rear would be blocked.
You will notice in the pics above showing the rear mounted Codan autotune that the upper section above the roof line. Also if you look at a most rear mounted Barret autotunes, only the whip is above the roof line.

