Just bought a D2 Td5, so watching this thread with interest.
I'd like to add some thoughts, please feel free to disregard if these areas have already been covered.
No experience with the Td5 per se, but all my years of other diesel engine experience tells me that the symptoms you're describing sound like either a) fuel delivery problem, b) air getting into the fuel system, or c) an electrical fault caused by heat buildup in some component of the injection electrical system.
The varying injector readings are what you would expect to see from any of the above causes.
Given that pumps and fpr have been replaced/checked that only leaves the fuel lines and unions/fittings to possibly account for air entering the system, or some form of restriction, or perhaps the tank pickup area, either sucking air, or blocking/failing to deliver. Symptoms are reminiscent of a few problems I've seen like that over the years. If the symptoms can be brought on while the car is stationary, then providing a fuel feed from an external source (fuel can) may help to isolate or discount, any issues with the tank end. May take a bit more setting up if it only appears whilst driving under load 
Further to the tank theory, have you drained/checked the fuel in the tank? Had an old truck once where a piece of rag had somehow ended up in the tank, and used to float back and block the pickup (only when going uphill). That one took us ages to figure out! 
Good luck with it
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1999 Disco TD5 ("Bluey")
1996 Disco 300 TDi ("Slo-Mo")
1995 P38A 4.6 HSE ("The Limo")
1966 No 5 Trailer (ARN 173 075) soon to be camper
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