Sealing up the joints is never a bad move. Water always finds a path. However your thoughts are flawed in that even on full acceleration the inlet pressure pre turbo is always at or around atmospheric, possibly slightly less. if the inlet is covered with water it will course the obstruction that lowers the inlet pressure thereby coursing the out side air pressure to push the water in (there is no such thing as suck!) if you have leaky joints they will suck (i know, it doesn't exist) an amount of air but really, the amount of water will be the problem, not that you have a little bit of air also.
If you are submerged in water over the pipe work it will seep in past the poor sealing and get caught in the airflow and work its way though the system. as long as the wing vent is unobstructed water will not be sucked in.
In short, seal the pipe work. And fit a snorkel, its cheap insurance.


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