Landoman, this is just a suggestion, next time you try to charge your batteries via the Anderson plug, set your charger to the AGM mode. If the charger does not go into float, try connecting it to either battery and then see if it will go into float.
I suspect the thinner cable may be part of, if not the very reason your charger is not going into float.
Again, I suspect the changing of the charge setting from AGM to NORMAL may be changing the voltage level and current draw at which the charger monitors to determine when it should go into float and while it is AGM, the voltage is right on the boarder line but the voltage drop in the thinner cable is just enough to keep the current draw just too high and stops the charger getting to the level it needs to be able to change to float mode.
By moving the charger directly to the batteries, you remove the voltage drop and this may be enough to cause the charger to go into float while set to AGM.
This is just a suggestion but I base the possible outcome on the fact I have many people doing exactly what you are doing, with many different types of chargers and none are having your problem ( that I am aware of ) and the only difference is that they are all charging via 6B&S ( 13.5mm2 ) instead of your 8B&S ( 7.9mm2 ).




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