If I'm reading the wiring diagram correctly, the Engine bay fuse 1 is powered by the relay when the ECM wants to operate the in tank low fuel pressure pump. If that's correct, then removing the fuse when the ECM wasn't powering it anyway would make no difference. When the ECM decided it wanted to power the low pressure pump it would then throw an error message and, indeed, the engine would splutter to a stop and your dash would light up like a christmas tree.
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