Don't think you'll have a problem just blanking it off on the exhaust side . You'll still have some restriction on the intake side though (the egr butterfly valve thingy) but at least you'll stop the engine ingesting more fresh crud.
It would be far better to take the chance to remove the egr valve and clean it out before reinstalling it if thats the way you want to go. There will be a fair bit of oily sludge in your intake manifold.
I made up a plastic scraper to pull out as much of the sludge as i could as i did'nt have the time to pull the intake manifold off completely to clean it out properly.
I plan to pull it all apart and clean it out properly when i flush out the intercooler and replace intercooler hoses.
Cheers
Phill


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