I wouldn't be supprised if it was a cracked soldering joint on the window ECU. My D1 had the same problem and I decided I had to fix it when the rear windows wouldn't go back up one day and I had to leave them down. It was also an intermitent fault.
If you go to discoweb.org -- and then in the tech section you will find a tutorial under rear electric window. This will be able to step you through fixing the cracked solder.
It worked on my D1 and only took me 20min to pull it apart and reassemble. Good luck


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